PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015283001
Common NameGSBRNA2T00015283001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 357aa    MW: 39680.5 Da    PI: 6.5313
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015283001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.82.6e-3695191297
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                          lfqrlw++eDei lL+G++d+ ++++g s   d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k  sgke+ f+++hdq++fe
  GSBRNA2T00015283001  95 LFQRLWTDEDEIELLRGFLDYvTTHRGGSNPPDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFGSGKEVLFKSPHDQSTFE 184
                          79*******************88889989999********************************************************** PP

               DUF573  91 lskkiWg 97 
                          +s+kiW+
  GSBRNA2T00015283001 185 ISRKIWN 191
                          ******7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-3396191IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTSDHRVAVF SIDSPDHEGG ESDTDDDVAL PETNDDLNSP SNVTVALPSG SSAVPVSVIP  60
ADSSPKWHHR TTEIIHRRRQ QPPPPPPAID DSRRLFQRLW TDEDEIELLR GFLDYVTTHR  120
GGSNPPDTAP FYEMIKSKLQ LEFNKNQLVE KLRRLKKKYR NVMSKFGSGK EVLFKSPHDQ  180
STFEISRKIW NRTGKIIGFE MDFEVNGNSP SSNPSAAVEI ESENGVEKRG SRKRSRSRIG  240
KIEEDNNVNV NVNETASAGI GGLIEEIVRS CVSPLIKEVM NGTTSMMMAG SLGPVFTRSL  300
GYGLEGGGGG GNKAVRDERW RKQQILELEV YSRRLELVQE EIRATLHELK TMPSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015283001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124974.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A078G3Q50.0A0A078G3Q5_BRANA; BnaA01g33360D protein
STRINGBra040116.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-123DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]